Update [2004-10-15 11:34:10 EDT by ImJohnGalt]: The links to the video are up and down. I'm removing them as they go down. I'd suggest if at all possible you use the BitTorrent feed. There are thousands being fed at the moment, so it shouldn't take you long to get the whole thing.
Update [2004-10-16 1:48:10 EDT by ImJohnGalt]: Adding articles referencing the smackdown now.
Links below the fold.
BitTorrent Faq and Client Download - Thanks to tk421
The Crossfire Chronicles
BitTorrent CrossFire Link (thanks to ptibiger) - Use this first if at all possible
BFA hosts the video (thanks to genf)
Contemporary Insanity has WMV (35MB), MPEG (19MB), and MOV (35MB).
Crossfire smackdown video in three parts (thanks to Free Speech Zone)
Crossfire cleaned-up and smallified in Quicktime (thanks to Hyperbolic Pants Explosion - Great Handle!)
Yet another source (thanks to eyeswideopen)
Quicktime version (thanks onegoodmove and RNinNC) - ~15 MB
Crossfire clip on iFilm (thanks to Cinematt)
MediaMatters Crossfire video(thanks to drdave91)
Crossfire smackdown transcript
WaPo Reports on the smackdown
Salon on Stewart's Crossfire Appearance (thanks to Minnesotan)
The Extras
The Daily Show Videos Page at Comedy Central
Charlie Rose Streaming Audio
Larry King Interview Transcript - Aug 2004 (Thanks bgod)
William & Mary Commencement Address Transcript
Bill Moyers Interview Transcript
Stewart at the 2000 Republican Convention - Transcript
RealAudio of Stewart on Fresh Air - Sep 30, 2004
Jon Stewart Rolling Stone Excerpt
O'Reilly Factor Interview Transcript
Amazon.com's tiny Stewart Interview Transcript
AP Article from March 2004
New York Time Book Review of America: The Book
Jon Stewart on Al Franken - Audio - link from here to BitTorrent feed
Jon Stewart w/Howard Kurtz on Reliable Sources, 2004 - Transcript
Salon Article - Subscription Required (or watch an ad for a free day pass)